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  <channel>
    <title>Notebooks   </title>
    <link>http://bactra.org/notebooks</link>
    <description>Cosma's Notebooks</description>
    <language>en</language>

  <item>
    <title>Biological computers</title>
    <link>http://bactra.org/notebooks/1994/10/03#bio-computers</link>
    <description>
In three senses:
	&lt;ol&gt;
	&lt;li&gt; Living things --- or parts thereof --- which in some sense do computations already.  Presumably most of this happens in nervous systems.  I've just read a very convincing illustration of this,
&lt;blockquote&gt;
Bill Baird, &quot;&lt;a href=&quot;chaos.html&quot;&gt;Nonlinear Dynamics&lt;/a&gt; of
&lt;a href=&quot;pattern-formation.html&quot;&gt;Pattern Formation&lt;/a&gt; and Pattern Recognition
in the Rabbit Olfactory Bulb,&quot; &lt;cite&gt;Physica&lt;/cite&gt; 22D (1986) 150-175
&lt;/blockquote&gt;
 and feel keenly my wasted youth, since Dr. Baird is in the Berkeley Biophysics dept...
	&lt;li&gt; Computers could be made from organic materials --- cultured nerve
or immune cells, for instance.  &lt;cite&gt;High Technology&lt;/cite&gt; ran some
articles on this oh, nearly ten years ago, but since then I've heard
nothing about it, until Adleman started using DNA on the travelling
salesman problem.
	&lt;li&gt; Computers could have designs inspired by biology, like neural
networks or &lt;a href=&quot;evol-comp.html&quot;&gt;evolution.&lt;/a&gt;
(&lt;em&gt;Recommended&lt;/em&gt;: Sejnowski and Churchland, &quot;Computation in the
Era of Neuroscience,&quot; in Metropolis and Rota (eds.), &lt;cite&gt;A New Era in
Computation&lt;/cite&gt; (MIT, 1992).)
	&lt;/ol&gt;

&lt;ul&gt;To read:
	&lt;li&gt;Martyn Amos, &lt;cite&gt;&lt;a
href=&quot;http://www.csc.liv.ac.uk/~ctag/archive/th/amos-thesis.ab.html&quot;&gt;DNA
Computation&lt;/a&gt;&lt;/cite&gt; [Ph.D. Thesis, University of Warwick, 1997]
	&lt;li&gt;Yaakov Benenson, Binyamin Gil, Uri Ben-Dor, Rivka Adar and Ehud
Shapiro, &quot;An autonomous molecular computer for logical control of gene
expression&quot;, &lt;a
href=&quot;http://dx.doi.org/10.1038/nature02551&quot;&gt;&lt;cite&gt;Nature&lt;/cite&gt; &lt;strong&gt;429&lt;/strong&gt;
, (2004)&lt;/a&gt;
	&lt;li&gt;Dennis Bray, &lt;cite&gt;Wetware: A Computer in Every Living Cell&lt;/cite&gt;
[&lt;a
href=&quot;http://yalepress.yale.edu/yupbooks/book.asp?isbn=9780300141733&quot;&gt;blurb&lt;/a&gt;]
	&lt;li&gt;Michael Conrad, &quot;Molecular Computing,&quot; &lt;cite&gt;Advances in
Computers&lt;/cite&gt; &lt;strong&gt;31&lt;/strong&gt; (1990): 235--324
	&lt;li&gt;Tsugucjika Kaminuma and Gen Matsumoto, eds., &lt;cite&gt;Biocomputers:
the Next Generation from Japan&lt;/cite&gt; (trans. Norman Cook)
	&lt;li&gt;Richard Lipton and Eric Baum (eds.), &lt;cite&gt;DNA Based
Computers&lt;/cite&gt;
	&lt;li&gt;Michael S. Livstone, Danny van Noort and Laura F. Landweber,
&quot;Molecular computing revisited: a Moore's Law?&quot; &lt;a
href=&quot;http://dx.doi.org/10.1016/S0167-7799(03)00007-6&quot;&gt;&lt;cite&gt;Trends in
Biotechnology&lt;/cite&gt; &lt;strong&gt;21&lt;/strong&gt; (2003): 98--101&lt;/a&gt;
	&lt;li&gt;Gasper Tkacik, Curtis G. Callan Jr. and William Bialek,
&quot;Information capacity of genetic regulatory
elements&quot;, &lt;a href=&quot;http://arxiv.org/abs/0709.4209&quot;&gt;arxiv:0709.4209&lt;/a&gt;
	&lt;/ul&gt;
</description>
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