Synchronization and Functional Connectivity in Neural Systems

Andreas K. Engel, Pascal Fries and Wolf Singer, "Dynamic Predictions: Oscillations and Synchrony in Top-Down Processing," Nature Reviews Neuroscience 2 (2001): 704--716 [PDF]
Roberto F. Galán, G. Bard Ermentrout, and Nathaniel N. Urban, "Efficient Estimation of Phase-Resetting Curves in Real Neurons and its Significance for Neural-Network Modeling", Physical Review Letters 94 (2005): 158101
Mark A. Kramer, Erik Edwards, Maryam Soltani, Mitchel S. Berger and Robert T. Knight and Andrew J. Szeri, "Synchronization Measures of Bursting Data: Application to the Electrocorticogram of an Auditory Event-Related Experiment", Physical Review E 70 (2004): 011914 [This is a very interesting paper, but it omits, so far as I can see, the crucial details of what embedding parameters they used on their empirical data, and how those were selected]
R. Quian Quiroga, A. Kraskov, T. Kreuz and P. Grassberger, "Performance of different synchronization measures in real data: A case study on electroencephalographic signals," Physical Review E 65 (2002): 041903 = nlin.CD/0109023 [See also the interesting "Comment" by R. B. Duckrow and A. M. Albano, PRE 67 (2003): 063901, and the reply by the original authors, 063902 in the same volume]
Alexander Thiele and Gene stoner, "Neuronal synchrony does not correlate with motion coherence in cortical area MT," Nature 421 (2003): 366--370
Maxim Volgushev, Sylvain Chauvette, Mikhail Mukovski and Igor Timofeev, "Precise Long-Range Synchronization of Activity and Silence in Neocortical Neurons during Slow-Wave Sleep", The Journal of Neuroscience 26 (2006): 5665--5672 [Now open access; but thanks to Prof. Timofeev for sending me a reprint at the time.]

Kristina Lisa Klinkner, CRS, and Marcelo F. Camperi, "Measuring Shared Information and Coordinated Activity in Neuronal Networks", q-bio.NC/0506009

Aersten, Gerstein, Habib and Palm, "Dynamics of neuronal firing correlation - modulation in effective connectivity", Journal of Neurophysiology 61 (1989): 900-917
Kazuyuki Aihara and Isao Tokuda, "Possible neural coding with interevent intervals of synchronous firing," Physical Review E 66 (2002): 026212
Danielle S. Bassett, Andreas Meyer-Lindenberg, Sophie Achard, Thomas Duke, and Edward Bullmore, "Adaptive reconfiguration of fractal small-world human brain functional networks", Proceedings of the National Academy of Sciences 103 (2006): 19518--19523
Maxim Bazhenov, Igor Timofeev, Mircea Seriade, and Terrence J. Sejnowski, "Model of Thalamocortical Slow-Wave Sleep Oscillations and Transitions to Activated States", The Journal of Neuroscience 22 (2002): 8691--8704 [PDF reprint via Prof. Timofeev]
C. D. Brody, "Correlations without synchrony", Neural Computation 11 (1999): 1537--1551
Randy M. Bruno and Bert Sakmann, "Cortex Is Driven by Weak but Synchronously Active Thalamocortical Synapses", Science 312 (2006): 1622--1627
A. N. Burkitt and G. M. Clark, "Synchronization of the Neural Response to Noisy Periodic Synaptic Input," Neural Computation vol. 13 no. 12 (Dec. 2001)
Can Cai, Robert E. Kass and Valérie Ventura, "Statistical Assessment of Time-Varying Dependence Between Two Neurons", Journal of Neurophysiology 94 (2005): 2940--2947 [PDF]
Christel Faes, Helena Geys, Geert Molenberghs, Marc Aerts, Carmen Cadarso-Su´rez, Carlos Acuna, Monica Cano, "A Flexible Method to Measure Synchrony in Neuronal Firing", Journal of the American Statistical Association 103 (2008): 149--161 ["We propose a new measure of synchrony, the conditional synchrony measure, which is the probability of firing together given that at least one of the two neurons is active. Focus is on the specification of a flexible marginal model for multivariate correlated binary data together with a pseudolikelihood estimation approach..."]
Joachim Gross, Frank Schmitz, Irmtraud Schnitzler, Klaus Kessler, Kimron Shapiro, Bernhard Hommel and Alfons Schnitzler, "Modulation of long-range neural synchrony reflects temporal limitations of visual attention in humans", PNAS (2004)
Boris Gutkin, Tim Hely and Jürgen Jost, "Noisy Delays Bifurcation in a Positively Coupled Neural Circuit," physics/0009003
Kenneth D. Harris, "Neural Signatures of Cell Assembly Organization", Nature Reviews Neuroscience 6 (2005): 399--407
J. J. Hopfield and Carlos D. Brody, " What is a moment? Transient synchrony as a collective mechanism for spatiotemporal integration", PNAS 98 (2001): 1282-1287
Rajesh K. Kana, Timothy A. Keller, Vladimir Cherkassky, Nancy J. Minshew and Marcel Adam Just, "Atypical frontal-posterior synchronization of Theory of Mind regions in autism during mental state attribution", Social Neuroscience forthcoming (2008) [preprint]
Thomas Kreuz, Julie S. Haas, Alice Morelli, Henry D. I. Abarbanel, Antonio Politi, "Measuring spike train synchrony", physics/0701261
Michael A. Long, Scott J. Cruikshank, Michael J. Jutras and Barry W. Connors, "Abrupt Maturation of a Spike-Synchronizing Mechanism in Neocortex", Journal of Neuroscience 25 (2005): 7309--7316
Jörn Niessing, Boris Ebisch, Kerstin E. Schmidt, Michael Niessing, Wolf Singer and Ralf A. W. Galuske, "Hemodynamic Signals Correlate Tightly with Synchronized Gamma Oscillations", Science 309 (2005): 948--951
Yoshio Sakurai and Susumu Takahashi, "Dynamic Synchrony of Firing in the Monkey Prefrontal Cortex during Working-Memory Tasks", The Journal of Neuroscience 26 (2006): 10141--10153
Gabriele Scheler, "Network Topology influences Synchronization and Intrinsic Read-out", q-bio.NC/0507037
Jean-Philippe Thivierge and Paul Cisek, "Nonperiodic Synchronization in Heterogeneous Networks of Spiking Neurons", Journal of Neuroscience 28 (2008): 7968--7978
Paul H. E. Tiesinga, Jean-Marc Fellous, Emilio Salinas, Jorge V. Jose, and Terrence J. Sejnowski, "Inhibitory synchrony as a mechanism for attentional gain modulation", q-bio.NC/0503019
Antoine Venaille, Pablo Varona, and Mikhail I. Rabinovich, "Synchronization and coordination of sequences in two neural ensembles", Physical Review E 71 (2005): 061909
M.-P. Zorzano and L. Vazquez, "Emergence of Synchronous Oscillations in Neural Networks Excited by Noise", math.DS/0507141 = Physica D 179 (2003): 105--114

"Scale, Sparseness and Synchrony in Model Neuronal Networks"
"A Comparison of Neuronal Synchrony Measures"

Notebooks

Synchronization and Functional Connectivity in Neural Systems